STRALCP - Structure Alignment-based Clustering of Proteins (based on Identified Structurally Conserved Spans). Version: (08/16/2007) Questions or comments please send to Adam Zemla (adamz@llnl.gov) Parameters for the clustering program: Length of slots: 10 (empty: 0.20 boundaries: 0.20) Length of spans: 3 Cutoff for LGA_S score: 60.00 (refinement: 0.20) STRALCP data: SCOP_d_52.ok/TMP List of molecules: STRAL_d_52_L1 Name: d1e3ha4 d.52.3.1 25 1 Name: d1e3pa5 d.52.3.1 30 2 Name: d1egaa2 d.52.3.1 113 3 Name: d1egab2 d.52.3.1 114 4 Name: d1fjgc1 d.52.3.1 105 5 Name: d1gpma3 d.52.2.1 121 6 Name: d1gpmb3 d.52.2.1 121 7 Name: d1gpmc3 d.52.2.1 121 8 Name: d1gpmd3 d.52.2.1 121 9 Name: d1hh2p2 d.52.3.1 78 10 Name: d1hh2p3 d.52.3.1 68 11 Name: d1hnwc1 d.52.3.1 105 12 Name: d1hnxc1 d.52.3.1 105 13 Name: d1hnzc1 d.52.3.1 105 14 Name: d1hr0c1 d.52.3.1 105 15 Name: d1i94c1 d.52.3.1 105 16 Name: d1i95c1 d.52.3.1 105 17 Name: d1i96c1 d.52.3.1 105 18 Name: d1i97c1 d.52.3.1 105 19 Name: d1ib8a2 d.52.4.1 90 20 Name: d1j5ec1 d.52.3.1 105 21 Name: d1josa_ d.52.7.1 100 22 Name: d1k0ra2 d.52.3.1 79 23 Name: d1k0ra3 d.52.3.1 67 24 Name: d1k0rb2 d.52.3.1 79 25 Name: d1k0rb3 d.52.3.1 67 26 Name: d1kkga_ d.52.7.1 108 27 Name: d1l2fa2 d.52.3.1 78 28 Name: d1l2fa3 d.52.3.1 68 29 Name: d1mkya3 d.52.5.1 81 30 Name: d1n32c1 d.52.3.1 105 31 Name: d1n33c1 d.52.3.1 105 32 Name: d1n34c1 d.52.3.1 105 33 Name: d1n36c1 d.52.3.1 105 34 Name: d1ny8a_ d.52.6.1 97 35 Name: d1pa4a_ d.52.7.1 96 36 Name: d1uwda_ d.52.8.2 102 37 Name: d1v9ja_ d.52.6.1 113 38 Name: d1veha_ d.52.8.1 92 39 Name: d1wcja_ d.52.8.2 102 40 Name: d1wf3a2 d.52.3.1 118 41 Name: d1wh9a_ d.52.3.1 92 42 Name: d1xhja_ d.52.8.1 88 43 Name: d1xmoc1 d.52.3.1 105 44 Name: d1xmqc1 d.52.3.1 105 45 Name: d1xnqc1 d.52.3.1 105 46 Name: d1xnrc1 d.52.3.1 105 47 Name: d2proa1 d.52.1.1 81 48 Name: d2proa2 d.52.1.1 61 49 Name: d2prob1 d.52.1.1 82 50 Name: d2prob2 d.52.1.1 61 51 Name: d2proc1 d.52.1.1 68 52 Name: d2proc2 d.52.1.1 61 53 Name: d3proc1 d.52.1.1 80 54 Name: d3proc2 d.52.1.1 70 55 Name: d3prod1 d.52.1.1 83 56 Name: d3prod2 d.52.1.1 69 57 Name: d4proc1 d.52.1.1 80 58 Name: d4proc2 d.52.1.1 74 59 Name: d4prod1 d.52.1.1 81 60 Name: d4prod2 d.52.1.1 74 61 Total number of members: 61 ........................................ CLUSTER_NB: 1 Nb_of_members(1): 7 Reference_name: d1i96c1 Length: 105 Nb_of_matches: 76 Nb_of_spans: 12 Nb_of_slots: 11 Cluster Name Class ..#.#####.....#######.###.#############.###.#####..###########...######.....################.###....### Cluster:1 d1i96c1 d.52.3.1 ..I.PIGFR.....DWESRWY.GKK.YRHLLLEDQRIRG.LEK.LYSAG..RVDIERAADNV...VHVAKP.....RGGERIRVLREELAKL.GKN....VQE Cluster:1 d1fjgc1 d.52.3.1 ..I.PIGFR.....DWESRWY.GKK.YRHLLLEDQRIRG.LEK.LYSAG..RVDIERAADNV...VHVAKP.....RGGERIRVLREELAKL.GKN....VQE Cluster:1 d1i95c1 d.52.3.1 ..I.PIGFR.....DWESRWY.GKK.YRHLLLEDQRIRG.LEK.LYSAG..RVDIERAADNV...VHVAKP.....RGGERIRVLREELAKL.GKN....VQE Cluster:1 d1i97c1 d.52.3.1 ..I.PIGFR.....DWESRWY.GKK.YRHLLLEDQRIRG.LEK.LYSAG..RVDIERAADNV...VHVAKP.....RGGERIRVLREELAKL.GKN....VQE Cluster:1 d1n33c1 d.52.3.1 ..I.PIGFR.....DWESRWY.GKK.YRHLLLEDQRIRG.LEK.LYSAG..RVDIERAADNV...VHVAKP.....RGGERIRVLREELAKL.GKN....VQE Cluster:1 d1n34c1 d.52.3.1 ..I.PIGFR.....DWESRWY.GKK.YRHLLLEDQRIRG.LEK.LYSAG..RVDIERAADNV...VHVAKP.....RGGERIRVLREELAKL.GKN....VQE Cluster:1 d1n36c1 d.52.3.1 ..I.PIGFR.....DWESRWY.GKK.YRHLLLEDQRIRG.LEK.LYSAG..RVDIERAADNV...VHVAKP.....RGGERIRVLREELAKL.GKN....VQE # STRALCP results (SPANS in common) for: d1i96c1 d1i96c1 4-4 5_C:5_C I d1i96c1 6-10 7_C:11_C PIGFR d1i96c1 16-22 17_C:23_C DWESRWY d1i96c1 24-26 25_C:27_C GKK d1i96c1 28-40 29_C:41_C YRHLLLEDQRIRG d1i96c1 42-44 43_C:45_C LEK d1i96c1 46-50 47_C:51_C LYSAG d1i96c1 53-63 54_C:64_C RVDIERAADNV d1i96c1 67-72 68_C:73_C VHVAKP d1i96c1 78-93 79_C:94_C RGGERIRVLREELAKL d1i96c1 95-97 96_C:98_C GKN d1i96c1 102-104 103_C:105_C VQE # STRALCP results (SPANS in common) for: d1fjgc1 d1fjgc1 4-4 5_C:5_C I d1fjgc1 6-10 7_C:11_C PIGFR d1fjgc1 16-22 17_C:23_C DWESRWY d1fjgc1 24-26 25_C:27_C GKK d1fjgc1 28-40 29_C:41_C YRHLLLEDQRIRG d1fjgc1 42-44 43_C:45_C LEK d1fjgc1 46-50 47_C:51_C LYSAG d1fjgc1 53-63 54_C:64_C RVDIERAADNV d1fjgc1 67-72 68_C:73_C VHVAKP d1fjgc1 78-93 79_C:94_C RGGERIRVLREELAKL d1fjgc1 95-97 96_C:98_C GKN d1fjgc1 102-104 103_C:105_C VQE # STRALCP results (SPANS in common) for: d1i95c1 d1i95c1 4-4 5_C:5_C I d1i95c1 6-10 7_C:11_C PIGFR d1i95c1 16-22 17_C:23_C DWESRWY d1i95c1 24-26 25_C:27_C GKK d1i95c1 28-40 29_C:41_C YRHLLLEDQRIRG d1i95c1 42-44 43_C:45_C LEK d1i95c1 46-50 47_C:51_C LYSAG d1i95c1 53-63 54_C:64_C RVDIERAADNV d1i95c1 67-72 68_C:73_C VHVAKP d1i95c1 78-93 79_C:94_C RGGERIRVLREELAKL d1i95c1 95-97 96_C:98_C GKN d1i95c1 102-104 103_C:105_C VQE # STRALCP results (SPANS in common) for: d1i97c1 d1i97c1 4-4 5_C:5_C I d1i97c1 6-10 7_C:11_C PIGFR d1i97c1 16-22 17_C:23_C DWESRWY d1i97c1 24-26 25_C:27_C GKK d1i97c1 28-40 29_C:41_C YRHLLLEDQRIRG d1i97c1 42-44 43_C:45_C LEK d1i97c1 46-50 47_C:51_C LYSAG d1i97c1 53-63 54_C:64_C RVDIERAADNV d1i97c1 67-72 68_C:73_C VHVAKP d1i97c1 78-93 79_C:94_C RGGERIRVLREELAKL d1i97c1 95-97 96_C:98_C GKN d1i97c1 102-104 103_C:105_C VQE # STRALCP results (SPANS in common) for: d1n33c1 d1n33c1 4-4 5_C:5_C I d1n33c1 6-10 7_C:11_C PIGFR d1n33c1 16-22 17_C:23_C DWESRWY d1n33c1 24-26 25_C:27_C GKK d1n33c1 28-40 29_C:41_C YRHLLLEDQRIRG d1n33c1 42-44 43_C:45_C LEK d1n33c1 46-50 47_C:51_C LYSAG d1n33c1 53-63 54_C:64_C RVDIERAADNV d1n33c1 67-72 68_C:73_C VHVAKP d1n33c1 78-93 79_C:94_C RGGERIRVLREELAKL d1n33c1 95-97 96_C:98_C GKN d1n33c1 102-104 103_C:105_C VQE # STRALCP results (SPANS in common) for: d1n34c1 d1n34c1 4-4 5_C:5_C I d1n34c1 6-10 7_C:11_C PIGFR d1n34c1 16-22 17_C:23_C DWESRWY d1n34c1 24-26 25_C:27_C GKK d1n34c1 28-40 29_C:41_C YRHLLLEDQRIRG d1n34c1 42-44 43_C:45_C LEK d1n34c1 46-50 47_C:51_C LYSAG d1n34c1 53-63 54_C:64_C RVDIERAADNV d1n34c1 67-72 68_C:73_C VHVAKP d1n34c1 78-93 79_C:94_C RGGERIRVLREELAKL d1n34c1 95-97 96_C:98_C GKN d1n34c1 102-104 103_C:105_C VQE # STRALCP results (SPANS in common) for: d1n36c1 d1n36c1 4-4 5_C:5_C I d1n36c1 6-10 7_C:11_C PIGFR d1n36c1 16-22 17_C:23_C DWESRWY d1n36c1 24-26 25_C:27_C GKK d1n36c1 28-40 29_C:41_C YRHLLLEDQRIRG d1n36c1 42-44 43_C:45_C LEK d1n36c1 46-50 47_C:51_C LYSAG d1n36c1 53-63 54_C:64_C RVDIERAADNV d1n36c1 67-72 68_C:73_C VHVAKP d1n36c1 78-93 79_C:94_C RGGERIRVLREELAKL d1n36c1 95-97 96_C:98_C GKN d1n36c1 102-104 103_C:105_C VQE END_of_CLUSTER .................................... CLUSTER_NB: 2 Nb_of_members(1): 12 Reference_name: d1wh9a_ Length: 92 Nb_of_matches: 51 Nb_of_spans: 4 Nb_of_slots: 9 Cluster Name Class .......################....###........############################..........####.......... Cluster:2 d1wh9a_ d.52.3.1 .......KAELNEFLTRELAEDG....EVR........IILATRTQNVLGEKGRRIRELTAVVQKR..........YAEK.......... Cluster:2 d1hnwc1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1hnxc1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1hnzc1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1hr0c1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1i94c1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1j5ec1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1n32c1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1xmoc1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1xmqc1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1xnqc1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... Cluster:2 d1xnrc1 d.52.3.1 .......DQRIRGLLEKELYSAG....DIE........TVHVAKPGVVIGRGGERIRVLREELAKL..........NVQE.......... # STRALCP results (SPANS in common) for: d1wh9a_ d1wh9a_ 9-24 9_A:24_A KAELNEFLTRELAEDG d1wh9a_ 29-31 29_A:31_A EVR d1wh9a_ 40-67 40_A:67_A IILATRTQNVLGEKGRRIRELTAVVQKR d1wh9a_ 78-81 78_A:81_A YAEK # STRALCP results (SPANS in common) for: d1hnwc1 d1hnwc1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1hnwc1 55-57 56_C:58_C DIE d1hnwc1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1hnwc1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1hnxc1 d1hnxc1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1hnxc1 55-57 56_C:58_C DIE d1hnxc1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1hnxc1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1hnzc1 d1hnzc1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1hnzc1 55-57 56_C:58_C DIE d1hnzc1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1hnzc1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1hr0c1 d1hr0c1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1hr0c1 55-57 56_C:58_C DIE d1hr0c1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1hr0c1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1i94c1 d1i94c1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1i94c1 55-57 56_C:58_C DIE d1i94c1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1i94c1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1j5ec1 d1j5ec1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1j5ec1 55-57 56_C:58_C DIE d1j5ec1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1j5ec1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1n32c1 d1n32c1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1n32c1 55-57 56_C:58_C DIE d1n32c1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1n32c1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1xmoc1 d1xmoc1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1xmoc1 55-57 56_C:58_C DIE d1xmoc1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1xmoc1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1xmqc1 d1xmqc1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1xmqc1 55-57 56_C:58_C DIE d1xmqc1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1xmqc1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1xnqc1 d1xnqc1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1xnqc1 55-57 56_C:58_C DIE d1xnqc1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1xnqc1 101-104 102_C:105_C NVQE # STRALCP results (SPANS in common) for: d1xnrc1 d1xnrc1 35-50 36_C:51_C DQRIRGLLEKELYSAG d1xnrc1 55-57 56_C:58_C DIE d1xnrc1 66-93 67_C:94_C TVHVAKPGVVIGRGGERIRVLREELAKL d1xnrc1 101-104 102_C:105_C NVQE END_of_CLUSTER .................................. CLUSTER_NB: 3 Nb_of_members(1): 4 Reference_name: d1hh2p2 Length: 78 Nb_of_matches: 75 Nb_of_spans: 2 Nb_of_slots: 8 Cluster Name Class ##########################################.################################# Cluster:3 d1hh2p2 d.52.3.1 VPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASND.NVDPIGACIGEGGSRIAAILKELKGEKLDVLKW Cluster:3 d1k0ra2 d.52.3.1 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV.GLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY Cluster:3 d1k0rb2 d.52.3.1 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV.GLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY Cluster:3 d1l2fa2 d.52.3.1 VPEFVIGLXKLEIPEVENGIVEIKAIAREPGVRTKVAVASND.NVDPIGACIGEGGSRIAAILKELKGEKLDVLKW # STRALCP results (SPANS in common) for: d1hh2p2 d1hh2p2 2-43 200_P:241_P VPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASND d1hh2p2 45-77 243_P:275_P NVDPIGACIGEGGSRIAAILKELKGEKLDVLKW # STRALCP results (SPANS in common) for: d1k0ra2 d1k0ra2 2-43 185_A:226_A HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV d1k0ra2 45-77 228_A:260_A GLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY # STRALCP results (SPANS in common) for: d1k0rb2 d1k0rb2 2-43 185_B:226_B HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV d1k0rb2 45-77 228_B:260_B GLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY # STRALCP results (SPANS in common) for: d1l2fa2 d1l2fa2 2-43 200_A:241_A VPEFVIGLXKLEIPEVENGIVEIKAIAREPGVRTKVAVASND d1l2fa2 45-77 243_A:275_A NVDPIGACIGEGGSRIAAILKELKGEKLDVLKW END_of_CLUSTER ............................. CLUSTER_NB: 4 Nb_of_members(1): 7 Reference_name: d3prod2 Length: 69 Nb_of_matches: 59 Nb_of_spans: 2 Nb_of_slots: 7 Cluster Name Class ################...###########################################..... Cluster:4 d3prod2 d.52.1.1 SLKQLQSAMEQLDAGA...GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE..... Cluster:4 d2proa2 d.52.1.1 SLKQLQSAMEQLDAGA...GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE..... Cluster:4 d2prob2 d.52.1.1 SLKQLQSAMEQLDAGA...GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE..... Cluster:4 d2proc2 d.52.1.1 SLKQLQSAMEQLDAGA...GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE..... Cluster:4 d3proc2 d.52.1.1 SLKQLQSAMEQLDAGA...GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE..... Cluster:4 d4proc2 d.52.1.1 SLKQLQSAMEQLDAGA...GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE..... Cluster:4 d4prod2 d.52.1.1 SLKQLQSAMEQLDAGA...GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE..... # STRALCP results (SPANS in common) for: d3prod2 d3prod2 2-17 87_D:102_D SLKQLQSAMEQLDAGA d3prod2 21-63 115_D:157_D GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE # STRALCP results (SPANS in common) for: d2proa2 d2proa2 2-17 87_A:102_A SLKQLQSAMEQLDAGA d2proa2 18-60 115_A:157_A GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE # STRALCP results (SPANS in common) for: d2prob2 d2prob2 2-17 87_B:102_B SLKQLQSAMEQLDAGA d2prob2 18-60 115_B:157_B GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE # STRALCP results (SPANS in common) for: d2proc2 d2proc2 2-17 87_C:102_C SLKQLQSAMEQLDAGA d2proc2 18-60 115_C:157_C GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE # STRALCP results (SPANS in common) for: d3proc2 d3proc2 2-17 87_C:102_C SLKQLQSAMEQLDAGA d3proc2 22-64 115_C:157_C GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE # STRALCP results (SPANS in common) for: d4proc2 d4proc2 2-17 87_C:102_C SLKQLQSAMEQLDAGA d4proc2 23-65 115_C:157_C GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE # STRALCP results (SPANS in common) for: d4prod2 d4prod2 2-17 87_D:102_D SLKQLQSAMEQLDAGA d4prod2 23-65 115_D:157_D GVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIE END_of_CLUSTER ....................... CLUSTER_NB: 5 Nb_of_members(1): 7 Reference_name: d2proa1 Length: 81 Nb_of_matches: 59 Nb_of_spans: 3 Nb_of_slots: 8 Cluster Name Class ..................###############################.####################.######## Cluster:5 d2proa1 d.52.1.1 ..................PQYLQTEKLARTQAAAIEREFGAQFAGSWIE.NEDGSFKLVAATSGARKSST.GGVEVRNV Cluster:5 d2prob1 d.52.1.1 ..................PQYLQTEKLARTQAAAIEREFGAQFAGSWIE.NEDGSFKLVAATSGARKSST.GGVEVRNV Cluster:5 d2proc1 d.52.1.1 ..................PQYLQTEKLARTQAAAIEREFGAQFAGSWIE.NEDGSFKLVAATSGARKSST.GGVEVRNV Cluster:5 d3proc1 d.52.1.1 ..................PQYLQTEKLARTQAAAIEREFGAQFAGSWIE.NEDGSFKLVAATSGARKSST.GGVEVRNV Cluster:5 d3prod1 d.52.1.1 ..................PQYLQTEKLARTQAAAIEREFGAQFAGSWIE.NEDGSFKLVAATSGARKSST.GGVEVRNV Cluster:5 d4proc1 d.52.1.1 ..................PQYLQTEKLARTQAAAIEREFGAQFAGSWIE.NEDGSFKLVAATSGARKSST.GGVEVRNV Cluster:5 d4prod1 d.52.1.1 ..................PQYLQTEKLARTQAAAIEREFGAQFAGSWIE.NEDGSFKLVAATSGARKSST.GGVEVRNV # STRALCP results (SPANS in common) for: d2proa1 d2proa1 20-50 24_A:54_A PQYLQTEKLARTQAAAIEREFGAQFAGSWIE d2proa1 52-71 56_A:75_A NEDGSFKLVAATSGARKSST d2proa1 73-80 77_A:84_A GGVEVRNV # STRALCP results (SPANS in common) for: d2prob1 d2prob1 21-51 24_B:54_B PQYLQTEKLARTQAAAIEREFGAQFAGSWIE d2prob1 53-72 56_B:75_B NEDGSFKLVAATSGARKSST d2prob1 74-81 77_B:84_B GGVEVRNV # STRALCP results (SPANS in common) for: d2proc1 d2proc1 7-37 24_C:54_C PQYLQTEKLARTQAAAIEREFGAQFAGSWIE d2proc1 39-58 56_C:75_C NEDGSFKLVAATSGARKSST d2proc1 60-67 77_C:84_C GGVEVRNV # STRALCP results (SPANS in common) for: d3proc1 d3proc1 19-49 24_C:54_C PQYLQTEKLARTQAAAIEREFGAQFAGSWIE d3proc1 51-70 56_C:75_C NEDGSFKLVAATSGARKSST d3proc1 72-79 77_C:84_C GGVEVRNV # STRALCP results (SPANS in common) for: d3prod1 d3prod1 22-52 24_D:54_D PQYLQTEKLARTQAAAIEREFGAQFAGSWIE d3prod1 54-73 56_D:75_D NEDGSFKLVAATSGARKSST d3prod1 75-82 77_D:84_D GGVEVRNV # STRALCP results (SPANS in common) for: d4proc1 d4proc1 19-49 24_C:54_C PQYLQTEKLARTQAAAIEREFGAQFAGSWIE d4proc1 51-70 56_C:75_C NEDGSFKLVAATSGARKSST d4proc1 72-79 77_C:84_C GGVEVRNV # STRALCP results (SPANS in common) for: d4prod1 d4prod1 20-50 24_D:54_D PQYLQTEKLARTQAAAIEREFGAQFAGSWIE d4prod1 52-71 56_D:75_D NEDGSFKLVAATSGARKSST d4prod1 73-80 77_D:84_D GGVEVRNV END_of_CLUSTER .................... CLUSTER_NB: 6 Nb_of_members(1): 4 Reference_name: d1gpmc3 Length: 121 Nb_of_matches: 112 Nb_of_spans: 2 Nb_of_slots: 13 Cluster Name Class #####################################################.......########################################################### Cluster:6 d1gpmc3 d.52.2.1 PGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVG.......YDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW Cluster:6 d1gpma3 d.52.2.1 PGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVG.......YDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW Cluster:6 d1gpmb3 d.52.2.1 PGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVG.......YDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW Cluster:6 d1gpmd3 d.52.2.1 PGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVG.......YDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW # STRALCP results (SPANS in common) for: d1gpmc3 d1gpmc3 2-54 406_C:458_C PGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVG d1gpmc3 62-120 466_C:524_C YDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW # STRALCP results (SPANS in common) for: d1gpma3 d1gpma3 2-54 406_A:458_A PGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVG d1gpma3 62-120 466_A:524_A YDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW # STRALCP results (SPANS in common) for: d1gpmb3 d1gpmb3 2-54 406_B:458_B PGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVG d1gpmb3 62-120 466_B:524_B YDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW # STRALCP results (SPANS in common) for: d1gpmd3 d1gpmd3 2-54 406_D:458_D PGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVG d1gpmd3 62-120 466_D:524_D YDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW END_of_CLUSTER ................. CLUSTER_NB: 7 Nb_of_members(1): 4 Reference_name: d1hh2p3 Length: 68 Nb_of_matches: 62 Nb_of_spans: 1 Nb_of_slots: 7 Cluster Name Class .##############################################################... Cluster:7 d1hh2p3 d.52.3.1 .PKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP... Cluster:7 d1k0ra3 d.52.3.1 .PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG... Cluster:7 d1k0rb3 d.52.3.1 .PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG... Cluster:7 d1l2fa3 d.52.3.1 .PKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP... # STRALCP results (SPANS in common) for: d1hh2p3 d1hh2p3 3-64 279_P:340_P PKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP # STRALCP results (SPANS in common) for: d1k0ra3 d1k0ra3 2-63 264_A:325_A PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG # STRALCP results (SPANS in common) for: d1k0rb3 d1k0rb3 2-63 264_B:325_B PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG # STRALCP results (SPANS in common) for: d1l2fa3 d1l2fa3 3-64 279_A:340_A PKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP END_of_CLUSTER .............. CLUSTER_NB: 8 Nb_of_members(1): 3 Reference_name: d1egaa2 Length: 113 Nb_of_matches: 81 Nb_of_spans: 4 Nb_of_slots: 11 Cluster Name Class ........##############..#....###########....#######################################################............ Cluster:8 d1egaa2 d.52.3.1 ........FMASEIIREKLMRF..A....SVTVEIERFVS....GYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVK............ Cluster:8 d1egab2 d.52.3.1 ........FMASEIIREKLMRF..A....SVTVEIERFVS....GYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVK............ Cluster:8 d1wf3a2 d.52.3.1 ........EWVAEILREEAMKR..H....AVATKVEEVAE....VLYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVY............ # STRALCP results (SPANS in common) for: d1egaa2 d1egaa2 10-23 192_A:205_A FMASEIIREKLMRF d1egaa2 26-26 208_A:208_A A d1egaa2 31-41 213_A:223_A SVTVEIERFVS d1egaa2 46-100 228_A:282_A GYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVK # STRALCP results (SPANS in common) for: d1egab2 d1egab2 10-23 192_B:205_B FMASEIIREKLMRF d1egab2 26-26 208_B:208_B A d1egab2 31-41 213_B:223_B SVTVEIERFVS d1egab2 46-100 228_B:282_B GYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVK # STRALCP results (SPANS in common) for: d1wf3a2 d1wf3a2 11-24 191_A:204_A EWVAEILREEAMKR d1wf3a2 27-27 207_A:207_A H d1wf3a2 32-42 212_A:222_A AVATKVEEVAE d1wf3a2 47-101 227_A:281_A VLYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVY END_of_CLUSTER ............ CLUSTER_NB: 9 Nb_of_members(1): 2 Reference_name: d1wcja_ Length: 102 Nb_of_matches: 98 Nb_of_spans: 2 Nb_of_slots: 11 Cluster Name Class .##################################################.################################################ Cluster:9 d1wcja_ d.52.8.2 .KKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTP.CPLAGMILSDAEEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFG Cluster:9 d1uwda_ d.52.8.2 .KKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTP.CPLAGMILSDAEEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFG # STRALCP results (SPANS in common) for: d1wcja_ d1wcja_ 3-52 4_A:53_A KKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTP d1wcja_ 54-101 55_A:102_A CPLAGMILSDAEEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFG # STRALCP results (SPANS in common) for: d1uwda_ d1uwda_ 3-52 4_A:53_A KKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTP d1uwda_ 54-101 55_A:102_A CPLAGMILSDAEEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFG END_of_CLUSTER .......... CLUSTER_NB: 10 Nb_of_members(1): 2 Reference_name: d1e3ha4 Length: 25 Nb_of_matches: 17 Nb_of_spans: 1 Nb_of_slots: 3 Cluster Name Class #################...... Cluster:10 d1e3ha4 d.52.3.1 PRIIQIQEDTGAEIYIG...... Cluster:10 d1e3pa5 d.52.3.1 PRIIQIQEDTGAEIYIG...... # STRALCP results (SPANS in common) for: d1e3ha4 d1e3ha4 2-18 580_A:625_A PRIIQIQEDTGAEIYIG # STRALCP results (SPANS in common) for: d1e3pa5 d1e3pa5 2-21 580_A:625_A PRIIQIQEDTGAEIYIG END_of_CLUSTER ......... CLUSTER_NB: 11 Nb_of_members(1): 1 Reference_name: d1ib8a2 Length: 90 Nb_of_matches: 88 Nb_of_spans: 1 Nb_of_slots: 10 Cluster Name Class ######################################################################################## Cluster:11 d1ib8a2 d.52.4.1 SGVDAIATIVELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGL # STRALCP results (SPANS in common) for: d1ib8a2 d1ib8a2 2-89 2_A:89_A SGVDAIATIVELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGL END_of_CLUSTER ........ CLUSTER_NB: 12 Nb_of_members(1): 1 Reference_name: d1josa_ Length: 100 Nb_of_matches: 98 Nb_of_spans: 1 Nb_of_slots: 11 Cluster Name Class ################################################################################################## Cluster:12 d1josa_ d.52.7.1 SDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEG # STRALCP results (SPANS in common) for: d1josa_ d1josa_ 2-99 8_A:105_A SDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEG END_of_CLUSTER ....... CLUSTER_NB: 13 Nb_of_members(1): 1 Reference_name: d1kkga_ Length: 108 Nb_of_matches: 106 Nb_of_spans: 1 Nb_of_slots: 11 Cluster Name Class ########################################################################################################## Cluster:13 d1kkga_ d.52.7.1 AKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGM # STRALCP results (SPANS in common) for: d1kkga_ d1kkga_ 2-107 2_A:107_A AKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGM END_of_CLUSTER ...... CLUSTER_NB: 14 Nb_of_members(1): 1 Reference_name: d1mkya3 Length: 81 Nb_of_matches: 79 Nb_of_spans: 1 Nb_of_slots: 9 Cluster Name Class ############################################################################### Cluster:14 d1mkya3 d.52.5.1 VPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRS # STRALCP results (SPANS in common) for: d1mkya3 d1mkya3 2-80 360_A:438_A VPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRS END_of_CLUSTER ..... CLUSTER_NB: 15 Nb_of_members(1): 1 Reference_name: d1ny8a_ Length: 97 Nb_of_matches: 95 Nb_of_spans: 1 Nb_of_slots: 10 Cluster Name Class ############################################################################################### Cluster:15 d1ny8a_ d.52.6.1 IEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGFLEHHHHH # STRALCP results (SPANS in common) for: d1ny8a_ d1ny8a_ 2-96 2_A:96_A IEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGFLEHHHHH END_of_CLUSTER .... CLUSTER_NB: 16 Nb_of_members(1): 1 Reference_name: d1pa4a_ Length: 96 Nb_of_matches: 94 Nb_of_spans: 1 Nb_of_slots: 10 Cluster Name Class ############################################################################################## Cluster:16 d1pa4a_ d.52.7.1 ERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQIDRVVGAFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNA # STRALCP results (SPANS in common) for: d1pa4a_ d1pa4a_ 2-95 7_A:100_A ERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQIDRVVGAFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNA END_of_CLUSTER ... CLUSTER_NB: 17 Nb_of_members(1): 1 Reference_name: d1v9ja_ Length: 113 Nb_of_matches: 111 Nb_of_spans: 1 Nb_of_slots: 12 Cluster Name Class ############################################################################################################### Cluster:17 d1v9ja_ d.52.6.1 KGSSHHHHHHSSGASLVPRGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFEQKTLTPEQWTRQRR # STRALCP results (SPANS in common) for: d1v9ja_ d1v9ja_ 2-112 2_A:112_A KGSSHHHHHHSSGASLVPRGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFEQKTLTPEQWTRQRR END_of_CLUSTER .. CLUSTER_NB: 18 Nb_of_members(1): 1 Reference_name: d1veha_ Length: 92 Nb_of_matches: 90 Nb_of_spans: 1 Nb_of_slots: 10 Cluster Name Class ########################################################################################## Cluster:18 d1veha_ d.52.8.1 SSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPSS # STRALCP results (SPANS in common) for: d1veha_ d1veha_ 2-91 2_A:91_A SSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPSS END_of_CLUSTER . CLUSTER_NB: 19 Nb_of_members(1): 1 Reference_name: d1xhja_ Length: 88 Nb_of_matches: 86 Nb_of_spans: 1 Nb_of_slots: 9 Cluster Name Class ###################################################################################### Cluster:19 d1xhja_ d.52.8.1 PTENPTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFLEHHHHH # STRALCP results (SPANS in common) for: d1xhja_ d1xhja_ 2-87 2_A:87_A PTENPTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFLEHHHHH END_of_CLUSTER Calculated number of clusters: 19 END of job