STRALCP - Structure Alignment-based Clustering of Proteins (based on Identified Structurally Conserved Spans). Version: (08/16/2007) Questions or comments please send to Adam Zemla (adamz@llnl.gov) Parameters for the clustering program: Length of slots: 10 (empty: 0.20 boundaries: 0.20) Length of spans: 3 Cutoff for LGA_S score: 60.00 (refinement: 0.20) STRALCP data: SCOP_a_8.ok/TMP List of molecules: STRAL_a_8_L1 Name: d1bdc__ a.8.1.1 60 1 Name: d1bdd__ a.8.1.1 60 2 Name: d1deeg_ a.8.1.1 51 3 Name: d1deeh_ a.8.1.1 54 4 Name: d1dkxa1 a.8.4.1 101 5 Name: d1dkya1 a.8.4.1 93 6 Name: d1dkyb1 a.8.4.1 85 7 Name: d1dkza1 a.8.4.1 97 8 Name: d1edi__ a.8.1.1 56 9 Name: d1edj__ a.8.1.1 56 10 Name: d1edk__ a.8.1.1 56 11 Name: d1edl__ a.8.1.1 56 12 Name: d1fc2c_ a.8.1.1 43 13 Name: d1gab__ a.8.1.2 53 14 Name: d1gjsa_ a.8.1.2 65 15 Name: d1gjta_ a.8.1.2 65 16 Name: d1gvna_ a.8.2.1 87 17 Name: d1gvnc_ a.8.2.1 85 18 Name: d1h0ta_ a.8.1.1 58 19 Name: d1h0tb_ a.8.1.1 58 20 Name: d1htya1 a.8.3.1 111 21 Name: d1hwwa1 a.8.3.1 111 22 Name: d1hxka1 a.8.3.1 111 23 Name: d1k1wa1 a.8.3.2 74 24 Name: d1k1xa1 a.8.3.2 74 25 Name: d1k1xb1 a.8.3.2 74 26 Name: d1k1ya1 a.8.3.2 74 27 Name: d1k1yb1 a.8.3.2 74 28 Name: d1lp1a_ a.8.1.1 55 29 Name: d1lp1b_ a.8.1.1 54 30 Name: d1nu7d1 a.8.6.1 146 31 Name: d1nu7d2 a.8.6.1 136 32 Name: d1nu7h1 a.8.6.1 146 33 Name: d1nu7h2 a.8.6.1 136 34 Name: d1nu9c1 a.8.6.1 145 35 Name: d1nu9c2 a.8.6.1 136 36 Name: d1nu9f1 a.8.6.1 145 37 Name: d1nu9f2 a.8.6.1 136 38 Name: d1o7d_1 a.8.3.1 94 39 Name: d1oksa_ a.8.5.1 53 40 Name: d1prb__ a.8.1.2 53 41 Name: d1ps3a1 a.8.3.1 111 42 Name: d1q2na_ a.8.1.1 58 43 Name: d1qwna1 a.8.3.1 111 44 Name: d1qwua1 a.8.3.1 111 45 Name: d1qx1a1 a.8.3.1 111 46 Name: d1r33a1 a.8.3.1 111 47 Name: d1r34a1 a.8.3.1 111 48 Name: d1r4ga_ a.8.5.1 53 49 Name: d1r5ea_ a.8.8.1 105 50 Name: d1r8ia_ a.8.7.1 187 51 Name: d1ss1a_ a.8.1.1 62 52 Name: d1t6oa_ a.8.5.1 49 53 Name: d1tf0b_ a.8.1.2 53 54 Name: d1u00a1 a.8.4.1 112 55 Name: d1ud0a_ a.8.4.1 84 56 Name: d1ud0b_ a.8.4.1 82 57 Name: d1ud0c_ a.8.4.1 88 58 Name: d1ud0d_ a.8.4.1 78 59 Name: d1ufaa1 a.8.3.3 105 60 Name: d1xvha1 a.8.1.2 64 61 Name: d1xvha2 a.8.1.2 56 62 Name: d1xvhb1 a.8.1.2 62 63 Name: d1xvhb2 a.8.1.2 56 64 Name: d2spza_ a.8.1.1 58 65 Total number of members: 65 ............................. CLUSTER_NB: 1 Nb_of_members(1): 21 Reference_name: d1deeh_ Length: 54 Nb_of_matches: 24 Nb_of_spans: 3 Nb_of_slots: 5 Cluster Name Class .....#########.....############....###.............. Cluster:1 d1deeh_ a.8.1.1 .....SAFYEILNM.....AQRNGFIQSLKD....STN.............. Cluster:1 d1bdc__ a.8.1.1 .....NAFYEILHL.....EQRNGFIQSLKD....SAN.............. Cluster:1 d1bdd__ a.8.1.1 .....NAFYEILHL.....EQRNGFIQSLKD....SAN.............. Cluster:1 d1deeg_ a.8.1.1 .....SAFYEILNM.....AQRNGFIQSLKD....STN.............. Cluster:1 d1edi__ a.8.1.1 .....NAFYQVLNM.....DQRNGFIQSLKD....SAN.............. Cluster:1 d1edj__ a.8.1.1 .....NAFYQVLNM.....DQRNGFIQSLKD....SAN.............. Cluster:1 d1edk__ a.8.1.1 .....NAFYQVLNM.....DQRNGFIQSLKD....SAN.............. Cluster:1 d1edl__ a.8.1.1 .....NAFYQVLNM.....DQRNGFIQSLKD....SAN.............. Cluster:1 d1fc2c_ a.8.1.1 .....NAFYEILHL.....EQRNGFIQSLKD....SAN.............. Cluster:1 d1h0ta_ a.8.1.1 .....NAFYEILHL.....EQRNAFIQSLKD....SAN.............. Cluster:1 d1h0tb_ a.8.1.1 .....VAGREIVTL.....PQKKAFIFSLWD....SAN.............. Cluster:1 d1lp1a_ a.8.1.1 .....VAGREIVTL.....PQKKAFIFSLWD....SAN.............. Cluster:1 d1lp1b_ a.8.1.1 .....NAFYEILHL.....EQRNAFIQSLKD....SAN.............. Cluster:1 d1oksa_ a.8.5.1 .....VIRSIIKSS.....DRKRYLXTLLDD....LAK.............. Cluster:1 d1q2na_ a.8.1.1 .....NAFYEILHL.....EQRNAFIQSLKD....SAN.............. Cluster:1 d1r4ga_ a.8.5.1 .....SLRLVIESS.....AEKAAYVKSLSK....VKA.............. Cluster:1 d1ss1a_ a.8.1.1 .....NAFWEILHL.....EQRNGFIQSLKD....SAN.............. Cluster:1 d1t6oa_ a.8.5.1 .....VIRSIIKSS.....DRKRYLMTLLDD....LAK.............. Cluster:1 d1xvha2 a.8.1.2 .....AAITAINGA.....KQKDALKAQANG....AQD.............. Cluster:1 d1xvhb2 a.8.1.2 .....AAITAINGA.....KQKDALKAQANG....AQD.............. Cluster:1 d2spza_ a.8.1.1 .....NAFYEILHL.....EQRNAFIQSLKD....SAN.............. # STRALCP results (SPANS in common) for: d1deeh_ d1deeh_ 7-15 2809_H:2817_H SAFYEILNM d1deeh_ 21-32 2823_H:2834_H AQRNGFIQSLKD d1deeh_ 37-39 2839_H:2841_H STN # STRALCP results (SPANS in common) for: d1bdc__ d1bdc__ 12-20 12:20 NAFYEILHL d1bdc__ 26-37 26:37 EQRNGFIQSLKD d1bdc__ 42-44 42:44 SAN # STRALCP results (SPANS in common) for: d1bdd__ d1bdd__ 12-20 12:20 NAFYEILHL d1bdd__ 26-37 26:37 EQRNGFIQSLKD d1bdd__ 42-44 42:44 SAN # STRALCP results (SPANS in common) for: d1deeg_ d1deeg_ 4-12 1809_G:1817_G SAFYEILNM d1deeg_ 18-29 1823_G:1834_G AQRNGFIQSLKD d1deeg_ 34-36 1839_G:1841_G STN # STRALCP results (SPANS in common) for: d1edi__ d1edi__ 9-17 9:17 NAFYQVLNM d1edi__ 23-34 23:34 DQRNGFIQSLKD d1edi__ 39-41 39:41 SAN # STRALCP results (SPANS in common) for: d1edj__ d1edj__ 9-17 9:17 NAFYQVLNM d1edj__ 23-34 23:34 DQRNGFIQSLKD d1edj__ 39-41 39:41 SAN # STRALCP results (SPANS in common) for: d1edk__ d1edk__ 9-17 9:17 NAFYQVLNM d1edk__ 23-34 23:34 DQRNGFIQSLKD d1edk__ 39-41 39:41 SAN # STRALCP results (SPANS in common) for: d1edl__ d1edl__ 9-17 9:17 NAFYQVLNM d1edl__ 23-34 23:34 DQRNGFIQSLKD d1edl__ 39-41 39:41 SAN # STRALCP results (SPANS in common) for: d1fc2c_ d1fc2c_ 7-15 130_C:138_C NAFYEILHL d1fc2c_ 21-32 144_C:155_C EQRNGFIQSLKD d1fc2c_ 37-39 160_C:162_C SAN # STRALCP results (SPANS in common) for: d1h0ta_ d1h0ta_ 11-19 11_A:19_A NAFYEILHL d1h0ta_ 25-36 25_A:36_A EQRNAFIQSLKD d1h0ta_ 41-43 41_A:43_A SAN # STRALCP results (SPANS in common) for: d1h0tb_ d1h0tb_ 11-19 11_B:19_B VAGREIVTL d1h0tb_ 25-36 25_B:36_B PQKKAFIFSLWD d1h0tb_ 41-43 41_B:43_B SAN # STRALCP results (SPANS in common) for: d1lp1a_ d1lp1a_ 8-16 11_A:19_A VAGREIVTL d1lp1a_ 22-33 25_A:36_A PQKKAFIFSLWD d1lp1a_ 38-40 41_A:43_A SAN # STRALCP results (SPANS in common) for: d1lp1b_ d1lp1b_ 8-16 11_B:19_B NAFYEILHL d1lp1b_ 22-33 25_B:36_B EQRNAFIQSLKD d1lp1b_ 38-40 41_B:43_B SAN # STRALCP results (SPANS in common) for: d1oksa_ d1oksa_ 5-13 6_A:14_A VIRSIIKSS d1oksa_ 18-29 19_A:30_A DRKRYLXTLLDD d1oksa_ 36-38 37_A:39_A LAK # STRALCP results (SPANS in common) for: d1q2na_ d1q2na_ 11-19 11_A:19_A NAFYEILHL d1q2na_ 25-36 25_A:36_A EQRNAFIQSLKD d1q2na_ 41-43 41_A:43_A SAN # STRALCP results (SPANS in common) for: d1r4ga_ d1r4ga_ 6-14 521_A:529_A SLRLVIESS d1r4ga_ 19-30 534_A:545_A AEKAAYVKSLSK d1r4ga_ 37-39 552_A:554_A VKA # STRALCP results (SPANS in common) for: d1ss1a_ d1ss1a_ 14-22 12_A:20_A NAFWEILHL d1ss1a_ 28-39 26_A:37_A EQRNGFIQSLKD d1ss1a_ 44-46 42_A:44_A SAN # STRALCP results (SPANS in common) for: d1t6oa_ d1t6oa_ 6-14 463_A:471_A VIRSIIKSS d1t6oa_ 19-30 476_A:487_A DRKRYLMTLLDD d1t6oa_ 37-39 494_A:496_A LAK # STRALCP results (SPANS in common) for: d1xvha2 d1xvha2 12-20 84_A:92_A AAITAINGA d1xvha2 26-37 98_A:109_A KQKDALKAQANG d1xvha2 44-46 116_A:118_A AQD # STRALCP results (SPANS in common) for: d1xvhb2 d1xvhb2 12-20 84_B:92_B AAITAINGA d1xvhb2 26-37 98_B:109_B KQKDALKAQANG d1xvhb2 44-46 116_B:118_B AQD # STRALCP results (SPANS in common) for: d2spza_ d2spza_ 11-19 11_A:19_A NAFYEILHL d2spza_ 25-36 25_A:36_A EQRNAFIQSLKD d2spza_ 41-43 41_A:43_A SAN END_of_CLUSTER ........................... CLUSTER_NB: 2 Nb_of_members(1): 10 Reference_name: d1hwwa1 Length: 111 Nb_of_matches: 87 Nb_of_spans: 2 Nb_of_slots: 11 Cluster Name Class ###################################..........####################################################............ Cluster:2 d1hwwa1 a.8.3.1 NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS..........LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL............ Cluster:2 d1htya1 a.8.3.1 NYWSGYYTSRPYHKRXDRVLXHYVRAAEXLSAWHS..........LEQARRELSLFQHHDGITGTAKTHVVVDYEQRXQEALKACQXVXQQSVYRLL............ Cluster:2 d1hxka1 a.8.3.1 NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS..........LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL............ Cluster:2 d1o7d_1 a.8.3.1 MFWTGYFSSRPALKRYERLSYNFLQVCNQLEALAG..........SAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLS............ Cluster:2 d1ps3a1 a.8.3.1 NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS..........LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL............ Cluster:2 d1qwna1 a.8.3.1 NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS..........LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL............ Cluster:2 d1qwua1 a.8.3.1 NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS..........LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL............ Cluster:2 d1qx1a1 a.8.3.1 NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS..........LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL............ Cluster:2 d1r33a1 a.8.3.1 NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS..........LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL............ Cluster:2 d1r34a1 a.8.3.1 NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS..........LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL............ # STRALCP results (SPANS in common) for: d1hwwa1 d1hwwa1 2-36 413_A:447_A NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS d1hwwa1 47-98 458_A:509_A LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL # STRALCP results (SPANS in common) for: d1htya1 d1htya1 2-36 413_A:447_A NYWSGYYTSRPYHKRXDRVLXHYVRAAEXLSAWHS d1htya1 47-98 458_A:509_A LEQARRELSLFQHHDGITGTAKTHVVVDYEQRXQEALKACQXVXQQSVYRLL # STRALCP results (SPANS in common) for: d1hxka1 d1hxka1 2-36 413_A:447_A NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS d1hxka1 47-98 458_A:509_A LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL # STRALCP results (SPANS in common) for: d1o7d_1 d1o7d_1 2-36 386_B:420_B MFWTGYFSSRPALKRYERLSYNFLQVCNQLEALAG d1o7d_1 40-91 433_C:484_C SAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLS # STRALCP results (SPANS in common) for: d1ps3a1 d1ps3a1 2-36 413_A:447_A NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS d1ps3a1 47-98 458_A:509_A LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL # STRALCP results (SPANS in common) for: d1qwna1 d1qwna1 2-36 413_A:447_A NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS d1qwna1 47-98 458_A:509_A LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL # STRALCP results (SPANS in common) for: d1qwua1 d1qwua1 2-36 413_A:447_A NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS d1qwua1 47-98 458_A:509_A LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL # STRALCP results (SPANS in common) for: d1qx1a1 d1qx1a1 2-36 413_A:447_A NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS d1qx1a1 47-98 458_A:509_A LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL # STRALCP results (SPANS in common) for: d1r33a1 d1r33a1 2-36 413_A:447_A NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS d1r33a1 47-98 458_A:509_A LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL # STRALCP results (SPANS in common) for: d1r34a1 d1r34a1 2-36 413_A:447_A NYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHS d1r34a1 47-98 458_A:509_A LEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL END_of_CLUSTER ......................... CLUSTER_NB: 3 Nb_of_members(1): 5 Reference_name: d1k1wa1 Length: 74 Nb_of_matches: 71 Nb_of_spans: 2 Nb_of_slots: 8 Cluster Name Class ##################################################.##################### Cluster:3 d1k1wa1 a.8.3.2 IWKNFFFKYPESNFXHKRXLXVSKAVRDNPEARKYILKAQCNDAYWHGVF.GIYLPHLRRTVWENIIKAQRY Cluster:3 d1k1xa1 a.8.3.2 IWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVF.GIYLPHLRRTVWENIIKAQRY Cluster:3 d1k1xb1 a.8.3.2 IWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVF.GIYLPHLRRTVWENIIKAQRY Cluster:3 d1k1ya1 a.8.3.2 IWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVF.GIYLPHLRRTVWENIIKAQRY Cluster:3 d1k1yb1 a.8.3.2 IWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVF.GIYLPHLRRTVWENIIKAQRY # STRALCP results (SPANS in common) for: d1k1wa1 d1k1wa1 2-51 312_A:361_A IWKNFFFKYPESNFXHKRXLXVSKAVRDNPEARKYILKAQCNDAYWHGVF d1k1wa1 53-73 363_A:383_A GIYLPHLRRTVWENIIKAQRY # STRALCP results (SPANS in common) for: d1k1xa1 d1k1xa1 2-51 312_A:361_A IWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVF d1k1xa1 53-73 363_A:383_A GIYLPHLRRTVWENIIKAQRY # STRALCP results (SPANS in common) for: d1k1xb1 d1k1xb1 2-51 312_B:361_B IWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVF d1k1xb1 53-73 363_B:383_B GIYLPHLRRTVWENIIKAQRY # STRALCP results (SPANS in common) for: d1k1ya1 d1k1ya1 2-51 312_A:361_A IWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVF d1k1ya1 53-73 363_A:383_A GIYLPHLRRTVWENIIKAQRY # STRALCP results (SPANS in common) for: d1k1yb1 d1k1yb1 2-51 312_B:361_B IWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGVF d1k1yb1 53-73 363_B:383_B GIYLPHLRRTVWENIIKAQRY END_of_CLUSTER ..................... CLUSTER_NB: 4 Nb_of_members(1): 4 Reference_name: d1dkya1 Length: 93 Nb_of_matches: 83 Nb_of_spans: 1 Nb_of_slots: 9 Cluster Name Class ###################################################################################........ Cluster:4 d1dkya1 a.8.4.1 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQE........ Cluster:4 d1dkxa1 a.8.4.1 NEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQE........ Cluster:4 d1dkyb1 a.8.4.1 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQE........ Cluster:4 d1dkza1 a.8.4.1 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQE........ # STRALCP results (SPANS in common) for: d1dkya1 d1dkya1 2-84 508_A:590_A NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQE # STRALCP results (SPANS in common) for: d1dkxa1 d1dkxa1 2-84 508_A:590_A NEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQE # STRALCP results (SPANS in common) for: d1dkyb1 d1dkyb1 2-84 508_B:590_B NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQE # STRALCP results (SPANS in common) for: d1dkza1 d1dkza1 2-84 508_A:590_A NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQE END_of_CLUSTER .................. CLUSTER_NB: 5 Nb_of_members(1): 4 Reference_name: d1nu7h1 Length: 146 Nb_of_matches: 135 Nb_of_spans: 1 Nb_of_slots: 15 Cluster Name Class .........####################################################################################################################################### Cluster:5 d1nu7h1 a.8.6.1 .........SRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHH Cluster:5 d1nu7d1 a.8.6.1 .........SRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHH Cluster:5 d1nu9c1 a.8.6.1 .........SRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHH Cluster:5 d1nu9f1 a.8.6.1 .........SRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHH # STRALCP results (SPANS in common) for: d1nu7h1 d1nu7h1 11-145 10_H:144_H SRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHH # STRALCP results (SPANS in common) for: d1nu7d1 d1nu7d1 11-145 10_D:144_D SRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHH # STRALCP results (SPANS in common) for: d1nu9c1 d1nu9c1 10-144 10_C:144_C SRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHH # STRALCP results (SPANS in common) for: d1nu9f1 d1nu9f1 10-144 10_F:144_F SRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHH END_of_CLUSTER ................. CLUSTER_NB: 6 Nb_of_members(1): 4 Reference_name: d1nu9f2 Length: 136 Nb_of_matches: 134 Nb_of_spans: 1 Nb_of_slots: 14 Cluster Name Class ###################################################################################################################################### Cluster:6 d1nu9f2 a.8.6.1 KPFTDEMEEKATARVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKETREAVTNANDSWKTKTVKKY Cluster:6 d1nu7d2 a.8.6.1 KPFTDEMEEKATARVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKETREAVTNANDSWKTKTVKKY Cluster:6 d1nu7h2 a.8.6.1 KPFTDEMEEKATARVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKETREAVTNANDSWKTKTVKKY Cluster:6 d1nu9c2 a.8.6.1 KPFTDEMEEKATARVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKETREAVTNANDSWKTKTVKKY # STRALCP results (SPANS in common) for: d1nu9f2 d1nu9f2 2-135 147_F:280_F KPFTDEMEEKATARVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKETREAVTNANDSWKTKTVKKY # STRALCP results (SPANS in common) for: d1nu7d2 d1nu7d2 2-135 147_D:280_D KPFTDEMEEKATARVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKETREAVTNANDSWKTKTVKKY # STRALCP results (SPANS in common) for: d1nu7h2 d1nu7h2 2-135 147_H:280_H KPFTDEMEEKATARVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKETREAVTNANDSWKTKTVKKY # STRALCP results (SPANS in common) for: d1nu9c2 d1nu9c2 2-135 147_C:280_C KPFTDEMEEKATARVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKETREAVTNANDSWKTKTVKKY END_of_CLUSTER ............. CLUSTER_NB: 7 Nb_of_members(1): 4 Reference_name: d1ud0a_ Length: 84 Nb_of_matches: 58 Nb_of_spans: 3 Nb_of_slots: 8 Cluster Name Class ....##########.#............###############################################....... Cluster:7 d1ud0a_ a.8.4.1 ....LESYAFNXKA.V............DKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ....... Cluster:7 d1ud0b_ a.8.4.1 ....LESYAFNXKA.V............DKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ....... Cluster:7 d1ud0c_ a.8.4.1 ....LESYAFNXKA.V............DKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ....... Cluster:7 d1ud0d_ a.8.4.1 ....LESYAFNXKA.V............DKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ....... # STRALCP results (SPANS in common) for: d1ud0a_ d1ud0a_ 6-15 542_A:551_A LESYAFNXKA d1ud0a_ 17-17 553_A:553_A V d1ud0a_ 30-76 566_A:612_A DKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ # STRALCP results (SPANS in common) for: d1ud0b_ d1ud0b_ 6-15 542_B:551_B LESYAFNXKA d1ud0b_ 17-17 553_B:553_B V d1ud0b_ 30-76 566_B:612_B DKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ # STRALCP results (SPANS in common) for: d1ud0c_ d1ud0c_ 9-18 542_C:551_C LESYAFNXKA d1ud0c_ 20-20 553_C:553_C V d1ud0c_ 33-79 566_C:612_C DKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ # STRALCP results (SPANS in common) for: d1ud0d_ d1ud0d_ 6-15 542_D:551_D LESYAFNXKA d1ud0d_ 17-17 553_D:553_D V d1ud0d_ 30-76 566_D:612_D DKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ END_of_CLUSTER ......... CLUSTER_NB: 8 Nb_of_members(1): 5 Reference_name: d1tf0b_ Length: 53 Nb_of_matches: 29 Nb_of_spans: 4 Nb_of_slots: 6 Cluster Name Class ......############.##.....#######.....########..... Cluster:8 d1tf0b_ a.8.1.2 ......KNAKEDAIAELK.AG.....YFNAINK.....EVNALKNE..... Cluster:8 d1gab__ a.8.1.2 ......KNAKEDAIAELK.AG.....YFNAINK.....EVNALKNE..... Cluster:8 d1gjsa_ a.8.1.2 ......AEAKVLANRELD.YG.....YKNLINN.....GVKALIDE..... Cluster:8 d1gjta_ a.8.1.2 ......AEAKVLANRELD.YG.....YKNLINN.....GVKALIDE..... Cluster:8 d1prb__ a.8.1.2 ......KNAKEDAIAELK.AG.....YFNAINK.....EVNALKNE..... # STRALCP results (SPANS in common) for: d1tf0b_ d1tf0b_ 8-19 8_B:19_B KNAKEDAIAELK d1tf0b_ 21-22 21_B:22_B AG d1tf0b_ 28-34 28_B:34_B YFNAINK d1tf0b_ 40-47 40_B:47_B EVNALKNE # STRALCP results (SPANS in common) for: d1gab__ d1gab__ 8-19 8:19 KNAKEDAIAELK d1gab__ 21-22 21:22 AG d1gab__ 28-34 28:34 YFNAINK d1gab__ 40-47 40:47 EVNALKNE # STRALCP results (SPANS in common) for: d1gjsa_ d1gjsa_ 21-32 21_A:32_A AEAKVLANRELD d1gjsa_ 34-35 34_A:35_A YG d1gjsa_ 40-46 40_A:46_A YKNLINN d1gjsa_ 52-59 52_A:59_A GVKALIDE # STRALCP results (SPANS in common) for: d1gjta_ d1gjta_ 21-32 21_A:32_A AEAKVLANRELD d1gjta_ 34-35 34_A:35_A YG d1gjta_ 40-46 40_A:46_A YKNLINN d1gjta_ 52-59 52_A:59_A GVKALIDE # STRALCP results (SPANS in common) for: d1prb__ d1prb__ 8-19 8:19 KNAKEDAIAELK d1prb__ 21-22 21:22 AG d1prb__ 28-34 28:34 YFNAINK d1prb__ 40-47 40:47 EVNALKNE END_of_CLUSTER ....... CLUSTER_NB: 9 Nb_of_members(1): 2 Reference_name: d1gvnc_ Length: 85 Nb_of_matches: 82 Nb_of_spans: 1 Nb_of_slots: 9 Cluster Name Class .################################################################################## Cluster:9 d1gvnc_ a.8.2.1 .TYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLN Cluster:9 d1gvna_ a.8.2.1 .TYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLN # STRALCP results (SPANS in common) for: d1gvnc_ d1gvnc_ 3-84 4_C:85_C TYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLN # STRALCP results (SPANS in common) for: d1gvna_ d1gvna_ 2-83 4_A:85_A TYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLN END_of_CLUSTER ..... CLUSTER_NB: 10 Nb_of_members(1): 2 Reference_name: d1xvhb1 Length: 62 Nb_of_matches: 60 Nb_of_spans: 1 Nb_of_slots: 7 Cluster Name Class ############################################################ Cluster:10 d1xvhb1 a.8.1.2 XGNLQTAINDKSGTLASQNFLDADEQKRNAYNQAVSAAETILAKTAVEQALNNVNNAKHA Cluster:10 d1xvha1 a.8.1.2 XGNLQTAINDKSGTLASQNFLDADEQKRNAYNQAVSAAETILAKTAVEQALNNVNNAKHA # STRALCP results (SPANS in common) for: d1xvhb1 d1xvhb1 2-61 4_B:71_B XGNLQTAINDKSGTLASQNFLDADEQKRNAYNQAVSAAETILAKTAVEQALNNVNNAKHA # STRALCP results (SPANS in common) for: d1xvha1 d1xvha1 2-63 4_A:71_A XGNLQTAINDKSGTLASQNFLDADEQKRNAYNQAVSAAETILAKTAVEQALNNVNNAKHA END_of_CLUSTER .... CLUSTER_NB: 11 Nb_of_members(1): 1 Reference_name: d1r5ea_ Length: 105 Nb_of_matches: 103 Nb_of_spans: 1 Nb_of_slots: 11 Cluster Name Class ####################################################################################################### Cluster:11 d1r5ea_ a.8.8.1 NVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDDMRSAITDWSDMREALQHAMGIHAD # STRALCP results (SPANS in common) for: d1r5ea_ d1r5ea_ 2-104 30_A:132_A NVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDDMRSAITDWSDMREALQHAMGIHAD END_of_CLUSTER ... CLUSTER_NB: 12 Nb_of_members(1): 1 Reference_name: d1r8ia_ Length: 187 Nb_of_matches: 185 Nb_of_spans: 1 Nb_of_slots: 19 Cluster Name Class ######################################################################################################################################################################################### Cluster:12 d1r8ia_ a.8.7.1 ELIKQGEQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLLGTSTNTLANNLPDNWKEVYSDAMNSSSSVTPSVNSMMGQFNAEVDDMTPSEAIAYMNKKLAEKGAYDRVMAEKAYNNQMQELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQGEQAKLNLMNMLQQSQDKLLRAQKDR # STRALCP results (SPANS in common) for: d1r8ia_ d1r8ia_ 2-186 33_A:217_A ELIKQGEQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLLGTSTNTLANNLPDNWKEVYSDAMNSSSSVTPSVNSMMGQFNAEVDDMTPSEAIAYMNKKLAEKGAYDRVMAEKAYNNQMQELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQGEQAKLNLMNMLQQSQDKLLRAQKDR END_of_CLUSTER .. CLUSTER_NB: 13 Nb_of_members(1): 1 Reference_name: d1u00a1 Length: 112 Nb_of_matches: 110 Nb_of_spans: 1 Nb_of_slots: 12 Cluster Name Class ############################################################################################################## Cluster:13 d1u00a1 a.8.4.1 TDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVD # STRALCP results (SPANS in common) for: d1u00a1 d1u00a1 2-111 505_A:614_A TDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVD END_of_CLUSTER . CLUSTER_NB: 14 Nb_of_members(1): 1 Reference_name: d1ufaa1 Length: 105 Nb_of_matches: 103 Nb_of_spans: 1 Nb_of_slots: 11 Cluster Name Class ####################################################################################################### Cluster:14 d1ufaa1 a.8.3.3 LNEKTLDYWEKVYRAEGAXREAARRGVLPEGVLRQAXRELLLLEASDWPFLXETGQAEAYARERYEEHARAFFHLLKGASPEELRALEERDNPFPEADPRLYL # STRALCP results (SPANS in common) for: d1ufaa1 d1ufaa1 2-104 414_A:516_A LNEKTLDYWEKVYRAEGAXREAARRGVLPEGVLRQAXRELLLLEASDWPFLXETGQAEAYARERYEEHARAFFHLLKGASPEELRALEERDNPFPEADPRLYL END_of_CLUSTER Calculated number of clusters: 14 END of job