Citing LGA: Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]
This form allows the submission of the "target" structure (reference structure in the PDB format) and the list of PDB chains for LGA comparison.
Please enter your email address in the box below. (Optional) E-mail Be sure that your email address is correct. Your data will be processed and you will be notified when the results of LGA analysis are completed. Bear in mind that if you enter an incorrect email address there is no way the server can contact you!
Job name (e.g. the name of the target structure which will be compared with structures from the PDB list): (Optional)
Parameters for LGA calculations: HELP
Sorting parameter: Name N RMSD Seq_ID LGA_S
Distance coloring scheme parameter: Range: 0.50 - 5.00
Copy and paste your PDB list into the box below (no more than 100 PDB entries): EXAMPLE
There are three different ways to enter your protein structure (target, reference structure) data:
1. Copy and paste your structure data in PDB format (coordinates in ATOM records) into the box below.
or
2. Print your PDB entry into the box below (use chain specification if exists, for example: 1cpi_A). Name of the PDB chain.
3. Include the name of your local file containing structure data. Protein Structure file If your PDB structure data is prepared as one file, just select the file containing data and this will be read and uploaded after you click "START" below.
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